Publications of Ruben Portugues

Félix, R.; Markov, D.; Renninger, S. L.; Tomás, A. R.; Laborde, A.; Carey, M. R.; Orger, M. B.; Portugues, R.: Structural and functional organization of visual responses in the inferior olive of larval zebrafish. The Journal of Neuroscience 44 (8), e2352212023 (2024)

Prat, O.; Petrucco, L.; Štih, V.; Portugues, R.: Comparing the representation of a simple visual stimulus across the cerebellar network. eNeuro 11 (7), 0023-24.2024 (2024)

Odstrcil, I.; Petkova, M. D.; Haesemeyer, M.; Boulanger-Weill, J.; Nikitchenko, M.; Gagnon, J. A.; Oteiza, P.; Schalek, R.; Peleg, A.; Portugues, R. et al.; Lichtman, J. W.; Engert, F.: Functional and ultrastructural analysis of reafferent mechanosensation in larval zebrafish. Current Biology 32 (1), pp. 176 - 189.e5 (2022)

Xiao, Y.; Petrucco, L.; Hoodless, L. J.; Portugues, R.; Czopka, T.: Oligodendrocyte precursor cells sculpt the visual system by regulating axonal remodeling. Nature Neuroscience 25 (3), pp. 280 - 284 (2022)

Claudi, F.; Tyson, A. L.; Petrucco, L.; Margrie, T. W.; Portugues, R.; Branco, T.: Visualizing anatomically registered data with brainrender. eLife 10, e65751 (2021)

Jafari, M.; Schumacher, A.-M.; Snaidero, N.; Ullrich Gavilanes, E. M.; Neziraj, T.; Kocsis-Jutka, V.; Engels, D.; Jürgens, T.; Wagner, I.; Weidinger, J. D. F. et al.; Schmidt, S. S.; Beltran, E.; Hagan, N.; Woodworth, L.; Ofengeim, D.; Gans, J.; Wolf, F.; Kreutzfeldt, M.; Portugues, R.; Merkler, D.; Misgeld, T.; Kerschensteiner, M.: Phagocyte-mediated synapse removal in cortical neuroinflammation is promoted by local calcium accumulation. Nature Neuroscience 24 (3), pp. 355 - 367 (2021)

Markov, D. A.; Petrucco, L.; Kist, A. M.; Portugues, R.: A cerebellar internal model calibrates a feedback controller involved in sensorimotor control. Nature Communications 12, 6694 (2021)

Valera, G.; Markov, D. A.; Bijari, K.; Randlett, O.; Asgharsharghi, A.; Baudoin, J.-P.; Ascoli, G. A.; Portugues, R.; Lopez-Schier, H.: A neuronal blueprint for directional mechanosensation in larval zebrafish. Current Biology 31 (7), pp. 1463 - 1475.e6 (2021)

Barykina, N. V.; Sotskov, V. P.; Gruzdeva, A. M.; Wu, Y. K.; Portugues, R.; Subach, O. M.; Chefanova, E. S.; Plusnin, V. V.; Ivashkina, O. I.; Anokhin, K. V. et al.; Vlaskina, A. V.; Korzhenevskiy, D. A.; Nikolaeva, A. Y.; Boyko, K. M.; Rakitina, T. V.; Varizhuk, A. M.; Pozmogova, G. E.; Subach, F. V.: FGCaMP7, an improved version of fungi-based ratiometric calcium indicator for in vivo visualization of neuronal activity. International Journal of Molecular Sciences 21 (8), 3012 (2020)

Claudi, F.; Petrucco, L.; Tyson, A. L.; Branco, T.; Margrie, T. W.; Portugues, R.: BrainGlobe Atlas API: A common interface for neuroanatomical atlases. The Journal of Open Source Software 5 (54), 2668 (2020)

Dragomir, E. I.; Štih, V.; Portugues, R.: Evidence accumulation during a sensorimotor decision task revealed by whole-brain imaging. Nature Neuroscience 23 (1), pp. 85 - 93 (2020)

Siju, K. P.; Štih, V.; Aimon, S.; Gjorgjieva, J.; Portugues, R.; Grunwald Kadow, I. C.: Valence and state-dependent population coding in dopaminergic neurons in the fly mushroom body. Current Biology 30 (11), pp. 2104 - 2115.e4 (2020)

Yildizoglu, T.; Riegler, C.; Fitzgerald, J. E.; Portugues, R.: A neural representation of naturalistic motion-guided behavior in the zebrafish brain. Current Biology 30 (12), pp. 2321 - 2333.e6 (2020)

Kist, A. M.; Portugues, R.: Optomotor swimming in larval zebrafish is driven by global whole-field visual motion and local light-dark transitions. Cell Reports 29 (3), pp. 659 - 670.e3 (2019)

Knogler, L. D.; Kist, A. M.; Portugues, R.: Motor context dominates output from purkinje cell functional regions during reflexive visuomotor behaviours. eLife 8, e42138 (2019)

Štih, V.; Petrucco, L.; Kist, A. M.; Portugues, R.: Stytra: An open-source, integrated system for stimulation, tracking and closed-loop behavioral experiments. PLoS Computational Biology 15 (4), e1006699 (2019)

Fabritius, A.; Ng, D.; Kist, A. M.; Erdogan, M.; Portugues, R.; Griesbeck, O.: Imaging-based screening platform assists protein engineering. Cell Chemical Biology 25 (12), pp. 1554 - 1561.e8 (2018)

Hildebrand, D. G. C.; Cicconet, M.; Iguel Torres, R. M.; Choi, W.; Quan, T. M.; Moon, J.; Wetzel, A. W.; Champion, A. S.; Graham, B. J.; Randlett, O. et al.; Plummer, G. S.; Portugues, R.; Bianco, I. H.; Saalfeld, S.; Baden, A. D.; Lillaney, K.; Burns, R.; Vogelstein, J. T.; Schier, A. F.; Lee, W.-C. A.; Jeong, W.-K.; Lichtman, J. W.; Engert, F.: Whole-brain serial-section electron microscopy in larval zebrafish. Nature 545 (7654), pp. 345 - 349 (2017)

Knogler, L. D.; Markov, D. A.; Dragomir, E. I.; Štih, V.; Portugues, R.: Sensorimotor representations in cerebellar granule cells in larval zebrafish are dense, spatially organized, and non-temporally patterned. Current Biology 27 (9), pp. 1288 - 1302 (2017)

Oteiza, P.; Odstrcil, I.; Lauder, G.; Portugues, R.; Engert, F.: A novel mechanism for mechanosensory-based rheotaxis in larval zebrafish. Nature 547 (7664), pp. 445 - 448 (2017)