Publications of Winfried Denk

Helmstaedter, M.; Briggman, K.; Denk, W.: High-accuracy neurite reconstruction for high-throughput neuroanatomy. Nature Neuroscience 14 (8), pp. 1081 - 1088 (2011)

Kleinfeld, D.; Bharioke, A.; Blinder, P.; Bock, D. D.; Briggman, K.; Chklovskii, D. B.; Denk, W.; Helmstaedter, M.; Kaufhold, J. P.; Lee, W. A. et al.; Meyer, H. S.; Micheva, K. D.; Oberlaender, M.; Prohaska, S.; Reid, R. C.; Smith, S. J.; Takemura, S.; Tsai, P. S.; Sakmann, B.: Large-scale automated histology in the pursuit of connectomes. The Journal of Neuroscience 31 (45), pp. 16125 - 16138 (2011)

Lichtman, J. W.; Denk, W.: The big and the small: Challenges of imaging the brain's circuits. Science 334 (6056), pp. 618 - 623 (2011)

Mittmann, W.; Wallace, D. J.; Czubayko, U.; Herb, J.; Schaefer, A. T.; Looger, L. L.; Denk, W.; Kerr, J. N.: Two-photon calcium imaging of evoked activity from L5 somatosensory neurons in vivo. Nature Neuroscience 14 (8), pp. 1089 - 1093 (2011)

Theer, P.; Denk, W.; Sheves, M.; Lewis, A.; Detwiler, P. B.: Second-harmonic generation imaging of membrane potential with retinal analogues. Biophysical Journal 100 (1), pp. 232 - 242 (2011)

Aguirre, A. D.; Sawinski, J.; Huang, S. W.; Zhou, C.; Denk, W.; Fujimoto, J. G.: High speed optical coherence microscopy with autofocus adjustment and a miniaturized endoscopic imaging probe. Optics Express 18 (5), pp. 4222 - 4239 (2010)

Turaga, S. C.; Murray, J. F.; Jain, V.; Roth, F.; Helmstaedter, M.; Briggman, K.; Denk, W.; Seung, H. S.: Convolutional networks can learn to generate affinity graphs for image segmentation. Neural computation 22 (2), pp. 511 - 538 (2010)

Euler, T.; Hausselt, S.; Margolis, D. J.; Breuninger, T.; Castell, X.; Detwiler, P. B.; Denk, W.: Eyecup Scope - Optical recordings of light stimulus-evoked fluorescence signals in the retina. Pflügers Archiv: European Journal of Physiology 457 (6), pp. 1393 - 1414 (2009)

Jurrus, E.; Hardy, M.; Tasdizen, T.; Fletcher, P. T.; Koshevoy, P.; Chien, C.; Denk, W.; Whitaker, R.: Axon tracking in serial block-face scanning electron microscopy. Medical Image Analysis 13 (1), pp. 180 - 188 (2009)

Sawinski, J.; Haydon-Wallace, D. J.; Greenberg, D. S.; Grossmann, S.; Denk, W.; Kerr, J. N.: Visually evoked activity in cortical cells imaged in freely moving animals. Proceedings of the National Academy of Sciences of the United States of America 106 (46), pp. 19557 - 19562 (2009)

Yamahachi, H.; Marik, S. A.; McManus, J. N.; Denk, W.; Gilbert, C. D.: Rapid axonal sprouting and pruning accompany functional reorganization in primary visual cortex. Neuron 64 (5), pp. 719 - 729 (2009)

Helmstaedter, M.; Briggman, K.; Denk, W.: 3D structural imaging of the brain with photons and electrons. Current Opinion in Neurobiology 18 (6), pp. 633 - 641 (2008)

Kerr, J. N.; Denk, W.: Imaging in vivo: Watching the brain in action. Nature Reviews Neuroscience 9 (3), pp. 195 - 205 (2008)

Kitamura, K.; Judkewitz, B.; Kano, M.; Denk, W.; Häusser, M.: Targeted patch−clamp recordings and single−cell electroporation of unlabeled neurons in vivo. Nature Methods 5 (1), pp. 61 - 67 (2008)

Kuhn, B.; Denk, W.; Bruno, R. M.: In vivo two−photon voltage−sensitive dye imaging reveals top−down control of cortical layers 1 and 2 during wakefulness. Proceedings of the National Academy of Sciences of the United States of America 105 (21), pp. 7588 - 7593 (2008)

Macke, J. H.; Maack, N.; Gupta, R.; Denk, W.; Schölkopf, B.; Borst, A.: Contour-propagation algorithms for semi-automated reconstruction of neural processes. Journal of Neuroscience Methods 167 (2), pp. 349 - 357 (2008)

Major, G.; Polsky, A.; Denk, W.; Schiller, J.; Tank, D. W.: Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons. Journal of Neurophysiology 99 (5), pp. 2584 - 2601 (2008)

O´Connell, M. K.; Murthy, S.; Phan, S.; Xu, C.; Buchanan, J.; Spilker, R.; Dalman, R. L.; Zarins, C. K.; Denk, W.; Taylor, C. A.: The three-dimensional micro- and nanostructure of the aortic medial lamellar unit measured using 3D confocal and electron microscopy imaging. Matrix Biology 27 (3), pp. 171 - 181 (2008)

Wallace, D. J.; Meyer zum Alten Borgloh, S.; Astori, S.; Yang, Y.; Bausen, M.; Kügler, S.; Palmer, A. E.; Tsien, R. Y.; Sprengel, R.; Kerr, J. N. et al.; Denk, W.; Hasan, M. T.: Single−spike detection in vitro and in vivo with a genetic Ca2+ sensor. Nature Methods 5 (9), pp. 797 - 804 (2008)

Hausselt, S.; Euler, T.; Detwiler, P. B.; Denk, W.: A dendrite-autonomous mechanism for direction selectivity in retinal starburst amacrine cells. PLoS Biology 5 (7), 185, pp. 1474 - 1493 (2007)